Week 14 – 12/6/17 – Using Paup with our ISSR Analysis

Date: 12/6/17

Location: G04

What I did

In this lab, I inserted the scored ISSR that I made on Text Edit. I saved it as a .Nex file and downloaded the free PAUP program. I had a total of 47 taxa and with 17 scores. After opening the .Nex file with the scored ISSR on the PAUP program, I ran a neighboring Joining/UPGMA analysis on it. This analysis gave me a NJ tree: 

I then ran a bootstrap analysis and it gave me a tree that looked like this:


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